Variant report
| Variant | rs6870347 |
|---|---|
| Chromosome Location | chr5:126963925-126963926 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1031847 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11743384 | 0.97[EUR][1000 genomes] |
| rs11746839 | 0.97[EUR][1000 genomes] |
| rs11746912 | 0.97[EUR][1000 genomes] |
| rs12188818 | 0.98[EUR][1000 genomes] |
| rs13154759 | 0.91[EUR][1000 genomes] |
| rs13166202 | 0.97[EUR][1000 genomes] |
| rs13175595 | 0.85[AMR][1000 genomes] |
| rs13190411 | 0.94[EUR][1000 genomes] |
| rs17605653 | 0.94[EUR][1000 genomes] |
| rs28466271 | 0.82[AMR][1000 genomes] |
| rs28527369 | 0.81[AMR][1000 genomes] |
| rs34700780 | 0.97[EUR][1000 genomes] |
| rs35111054 | 0.94[EUR][1000 genomes] |
| rs35376602 | 0.96[EUR][1000 genomes] |
| rs3851476 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs55681581 | 0.84[AMR][1000 genomes] |
| rs6595781 | 0.98[EUR][1000 genomes] |
| rs6595782 | 0.90[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6595784 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6876031 | 0.98[EUR][1000 genomes] |
| rs72794209 | 0.98[EUR][1000 genomes] |
| rs73337177 | 0.94[EUR][1000 genomes] |
| rs73337180 | 0.92[ASN][1000 genomes] |
| rs7705383 | 0.91[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7722896 | 0.81[AMR][1000 genomes] |
| rs7723560 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033607 | chr5:126385181-127304459 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv830479 | chr5:126849254-127053121 | Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1021483 | chr5:126927834-127304873 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:126963400-126967400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
