Variant report

Variant	rs11746912
Chromosome Location	chr5:126957519-126957520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:126951040..126953298-chr5:126955534..126958125,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1031847	0.96[EUR][1000 genomes]
rs11743384	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11746839	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12188818	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13154759	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13164325	0.92[AMR][1000 genomes]
rs13166202	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13182035	0.92[AMR][1000 genomes]
rs13183092	0.92[AMR][1000 genomes]
rs13190411	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17164722	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17164730	0.93[ASN][1000 genomes]
rs17605653	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17764039	0.93[ASN][1000 genomes]
rs17764069	0.81[ASN][1000 genomes]
rs34700780	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35111054	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35376602	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3851476	0.97[EUR][1000 genomes]
rs6595781	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6870347	0.97[EUR][1000 genomes]
rs6876031	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72794209	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73337177	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73783934	0.80[ASN][1000 genomes]
rs73783935	0.93[ASN][1000 genomes]
rs73783936	0.93[ASN][1000 genomes]
rs73783937	0.93[ASN][1000 genomes]
rs73783938	0.93[ASN][1000 genomes]
rs73783939	0.93[ASN][1000 genomes]
rs73783940	0.80[ASN][1000 genomes]
rs7723560	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv830479	chr5:126849254-127053121	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126944600-126960400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:126947600-126962000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:126952400-126957800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:126956400-126960000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:126956600-126961000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:126956800-126957800	Enhancers	Fetal Kidney	kidney
7	chr5:126956800-126960600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:126957000-126958000	Enhancers	Fetal Lung	lung
9	chr5:126957200-126958000	Enhancers	Fetal Brain Male	brain

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