Variant report

Variant	rs17166615
Chromosome Location	chr5:98418907-98418908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1530617	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1530618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1579894	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166621	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4257800	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4257801	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4264972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4298276	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4481368	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58302930	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6596674	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6862584	0.92[AFR][1000 genomes]
rs6871163	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6873294	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877147	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6889330	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6889540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890976	0.92[AFR][1000 genomes]
rs73146505	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73146506	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73146524	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146525	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146599	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146600	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146602	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73148403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7446098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7447126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7448779	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711104	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723083	0.85[AFR][1000 genomes]
rs9790928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791053	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791175	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98414600-98423600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98417400-98419400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:98417600-98419400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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