Variant report

Variant	rs6889540
Chromosome Location	chr5:98414319-98414320
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1530617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1530618	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1579894	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166621	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4257800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4257801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4264972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4298276	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4481368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58302930	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6596674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6861870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6862584	0.81[AFR][1000 genomes]
rs6871163	0.83[AMR][1000 genomes]
rs6873294	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6877147	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6889330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890798	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6890976	0.81[AFR][1000 genomes]
rs73146505	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73146506	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73146510	0.86[AFR][1000 genomes]
rs73146524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146600	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73146602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73148403	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7446098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7447126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7448779	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7710459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9790928	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791052	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791053	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9791175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98414000-98414600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98414200-98415600	Weak transcription	K562	blood

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