Variant report
| Variant | rs6862584 |
|---|---|
| Chromosome Location | chr5:98412512-98412513 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98411117..98412931-chr5:98414405..98417154,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1530617 | 0.85[AFR][1000 genomes] |
| rs1530618 | 0.85[AFR][1000 genomes] |
| rs1579894 | 0.85[AFR][1000 genomes] |
| rs17166615 | 0.92[AFR][1000 genomes] |
| rs17166621 | 0.82[AFR][1000 genomes] |
| rs4257800 | 0.81[AFR][1000 genomes] |
| rs4257801 | 0.81[AFR][1000 genomes] |
| rs4264972 | 0.85[AFR][1000 genomes] |
| rs4298276 | 0.88[AFR][1000 genomes] |
| rs4481368 | 0.83[AFR][1000 genomes] |
| rs58302930 | 0.85[AFR][1000 genomes] |
| rs6596674 | 0.81[AFR][1000 genomes] |
| rs6861870 | 0.81[AFR][1000 genomes] |
| rs6871163 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6889330 | 0.81[AFR][1000 genomes] |
| rs6889540 | 0.81[AFR][1000 genomes] |
| rs6890798 | 0.85[AFR][1000 genomes] |
| rs6890976 | 0.94[AFR][1000 genomes] |
| rs73146505 | 0.97[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73146506 | 0.97[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73146524 | 0.81[AFR][1000 genomes] |
| rs73146525 | 0.81[AFR][1000 genomes] |
| rs73146599 | 0.81[AFR][1000 genomes] |
| rs73146600 | 0.85[AFR][1000 genomes] |
| rs7446098 | 0.85[AFR][1000 genomes] |
| rs7447126 | 0.85[AFR][1000 genomes] |
| rs7448779 | 0.85[AFR][1000 genomes] |
| rs7723083 | 0.83[AFR][1000 genomes] |
| rs9790928 | 0.85[AFR][1000 genomes] |
| rs9791052 | 0.95[AFR][1000 genomes] |
| rs9791053 | 0.85[AFR][1000 genomes] |
| rs9791174 | 0.81[AFR][1000 genomes] |
| rs9791175 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98411800-98413200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr5:98412400-98412800 | Flanking Active TSS | K562 | blood |
