Variant report

Variant	rs17168401
Chromosome Location	chr7:14802021-14802022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11976755	0.86[JPT][hapmap]
rs11982632	1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap]
rs12333881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12334104	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12699665	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs17168417	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1723243	0.87[CEU][hapmap]
rs1723257	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17532173	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs56321550	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56656737	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57054093	0.90[ASN][1000 genomes]
rs6461123	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6461125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66726862	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67412719	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6944904	0.85[JPT][hapmap]
rs6962160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73064717	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73068688	0.91[ASN][1000 genomes]
rs73274385	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7784714	0.84[JPT][hapmap]
rs7784763	0.92[JPT][hapmap]
rs7788757	0.93[JPT][hapmap]
rs7789019	1.00[JPT][hapmap]
rs7811380	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7811862	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs979500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14794800-14807000	Weak transcription	HUVEC	blood vessel
2	chr7:14799400-14802400	Enhancers	Osteobl	bone
3	chr7:14800000-14802600	Enhancers	Colon Smooth Muscle	Colon
4	chr7:14800200-14802800	Enhancers	Fetal Heart	heart
5	chr7:14800200-14804200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr7:14800400-14802600	Enhancers	Brain Germinal Matrix	brain
7	chr7:14800800-14802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:14800800-14802400	Enhancers	Stomach Smooth Muscle	stomach
9	chr7:14800800-14802400	Enhancers	NHDF-Ad	bronchial
10	chr7:14800800-14802800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:14800800-14802800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:14800800-14802800	Enhancers	Fetal Stomach	stomach
13	chr7:14801000-14802400	Enhancers	Brain Substantia Nigra	brain
14	chr7:14801600-14802800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:14801600-14805000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:14801600-14807800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr7:14801800-14809000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:14801800-14809800	Weak transcription	Psoas Muscle	Psoas
19	chr7:14802000-14804200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr7:14802000-14804800	Weak transcription	Left Ventricle	heart
21	chr7:14802000-14806400	Weak transcription	Rectal Smooth Muscle	rectum

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