Variant report

Variant	rs66726862
Chromosome Location	chr7:14800423-14800424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12333881	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333979	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12334104	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17168401	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17168417	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1723257	0.91[ASN][1000 genomes]
rs56321550	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56656737	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57054093	0.90[ASN][1000 genomes]
rs6461123	0.90[ASN][1000 genomes]
rs6461125	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67412719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962160	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73064717	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73068688	0.91[ASN][1000 genomes]
rs73274385	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7811380	0.81[ASN][1000 genomes]
rs979500	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:14794800-14807000	Weak transcription	HUVEC	blood vessel
3	chr7:14796000-14801800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:14799400-14802400	Enhancers	Osteobl	bone
5	chr7:14800000-14801000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:14800000-14802000	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:14800000-14802600	Enhancers	Colon Smooth Muscle	Colon
8	chr7:14800200-14802800	Enhancers	Fetal Heart	heart
9	chr7:14800200-14804200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr7:14800400-14802600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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