Variant report

Variant	rs6461123
Chromosome Location	chr7:14776363-14776364
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12333881	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs12333979	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs12334104	0.85[ASN][1000 genomes]
rs17168401	0.85[CEU][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17168417	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs1723257	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56321550	0.85[ASN][1000 genomes]
rs56656737	0.85[ASN][1000 genomes]
rs57054093	0.82[ASN][1000 genomes]
rs6461125	0.85[CEU][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66726862	0.90[ASN][1000 genomes]
rs67412719	0.90[ASN][1000 genomes]
rs6962160	0.85[CEU][hapmap];0.85[ASN][1000 genomes]
rs73064717	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73068688	0.81[ASN][1000 genomes]
rs73274385	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs979500	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14775000-14779600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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