Variant report

Variant	rs17169240
Chromosome Location	chr7:16111116-16111117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16111096..16111792-chr7:16137940..16138673,2	MCF-7	breast:
2	chr7:15344409..15345014-chr7:16111015..16111547,2	MCF-7	breast:
3	chr7:15760649..15761697-chr7:16110615..16111343,3	MCF-7	breast:
4	chr7:15365434..15366404-chr7:16110606..16111525,6	MCF-7	breast:
5	chr7:16110607..16111591-chr7:16604555..16605101,2	K562	blood:
6	chr7:13564573..13565453-chr7:16110838..16111563,2	K562	blood:
7	chr7:15238978..15239740-chr7:16110589..16111290,3	K562	blood:
8	chr7:15929324..15929882-chr7:16110722..16111472,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10487907	0.92[ASN][1000 genomes]
rs17169227	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169259	1.00[AFR][1000 genomes]
rs17169260	1.00[AFR][1000 genomes]
rs17169337	1.00[CEU][hapmap]
rs17169339	1.00[CEU][hapmap]
rs17169341	1.00[CEU][hapmap]
rs17169343	1.00[CEU][hapmap]
rs17169349	1.00[CEU][hapmap]
rs17169351	1.00[CEU][hapmap]
rs17169353	1.00[CEU][hapmap]
rs28483341	0.92[ASN][1000 genomes]
rs6979583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73680572	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
3	chr7:16110800-16111400	Enhancers	Adipose Nuclei	Adipose
4	chr7:16110800-16113200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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