Variant report

Variant	rs17169227
Chromosome Location	chr7:16104327-16104328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10487907	0.84[ASN][1000 genomes]
rs17169240	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169255	0.87[ASN][1000 genomes]
rs17169336	0.84[JPT][hapmap]
rs17169337	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs17169339	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs17169341	1.00[CEU][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs17169343	1.00[CEU][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs17169347	0.82[CHD][hapmap];0.84[JPT][hapmap]
rs17169349	1.00[CEU][hapmap];0.83[CHD][hapmap];0.84[JPT][hapmap]
rs17169351	1.00[CEU][hapmap]
rs17169353	1.00[CEU][hapmap]
rs28483341	0.83[ASN][1000 genomes]
rs59529774	0.80[ASN][1000 genomes]
rs59618653	0.83[ASN][1000 genomes]
rs60525181	0.85[ASN][1000 genomes]
rs6979583	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73680572	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16096000-16106600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:16099200-16106600	Enhancers	Fetal Lung	lung
3	chr7:16101000-16106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:16102200-16107000	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:16102400-16106000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:16102800-16106200	Weak transcription	Liver	Liver
8	chr7:16103400-16106000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:16103600-16106000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
11	chr7:16103800-16105200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:16103800-16105800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:16103800-16105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:16103800-16105800	Weak transcription	Fetal Stomach	stomach
15	chr7:16103800-16106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:16103800-16106200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:16103800-16106200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:16103800-16106400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:16103800-16106600	Weak transcription	Fetal Kidney	kidney
20	chr7:16103800-16106800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:16103800-16106800	Weak transcription	Ovary	ovary
22	chr7:16104000-16104400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:16104000-16106000	Weak transcription	Osteobl	bone
24	chr7:16104000-16106200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:16104000-16106200	Weak transcription	Right Atrium	heart
26	chr7:16104200-16104400	Enhancers	Adipose Nuclei	Adipose
27	chr7:16104200-16104600	Enhancers	NHDF-Ad	bronchial
28	chr7:16104200-16105800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:16104200-16105800	Weak transcription	HUVEC	blood vessel
30	chr7:16104200-16106200	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:16104200-16106600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:16104200-16106800	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:16104200-16107200	Weak transcription	Psoas Muscle	Psoas
34	chr7:16104200-16107400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr7:16104200-16108000	Weak transcription	Left Ventricle	heart

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