Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10274855	1.00[EUR][1000 genomes]
rs1034960	1.00[EUR][1000 genomes]
rs13438329	1.00[EUR][1000 genomes]
rs17169227	0.80[ASN][1000 genomes]
rs17169255	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17169286	0.92[AFR][1000 genomes]
rs17169339	1.00[EUR][1000 genomes]
rs17169340	1.00[EUR][1000 genomes]
rs17169341	1.00[EUR][1000 genomes]
rs17169343	1.00[EUR][1000 genomes]
rs17169347	1.00[EUR][1000 genomes]
rs17169349	1.00[EUR][1000 genomes]
rs17169351	1.00[EUR][1000 genomes]
rs17169353	1.00[EUR][1000 genomes]
rs17169354	1.00[EUR][1000 genomes]
rs28446402	1.00[EUR][1000 genomes]
rs28470194	1.00[EUR][1000 genomes]
rs28640135	1.00[EUR][1000 genomes]
rs57213749	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59096069	1.00[EUR][1000 genomes]
rs59618653	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs60082144	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60525181	0.92[AFR][1000 genomes]
rs61059482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61172485	1.00[EUR][1000 genomes]
rs6977264	1.00[EUR][1000 genomes]
rs7777414	1.00[EUR][1000 genomes]
rs7787953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7794053	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16135800-16145200	Weak transcription	Left Ventricle	heart
2	chr7:16139800-16143600	Weak transcription	Fetal Lung	lung

Quick Search: