Variant report

Variant	rs60082144
Chromosome Location	chr7:16184639-16184640
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16179426..16181583-chr7:16183166..16185185,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10274855	0.83[EUR][1000 genomes]
rs1034960	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13438329	0.83[EUR][1000 genomes]
rs17169255	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17169286	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17169339	0.83[EUR][1000 genomes]
rs17169340	0.83[EUR][1000 genomes]
rs17169341	0.83[EUR][1000 genomes]
rs17169343	0.83[EUR][1000 genomes]
rs17169347	0.83[EUR][1000 genomes]
rs17169349	0.83[EUR][1000 genomes]
rs17169351	0.83[EUR][1000 genomes]
rs17169353	0.83[EUR][1000 genomes]
rs17169354	0.83[EUR][1000 genomes]
rs28446402	0.83[EUR][1000 genomes]
rs28470194	0.83[EUR][1000 genomes]
rs28640135	0.83[EUR][1000 genomes]
rs57213749	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59096069	0.83[EUR][1000 genomes]
rs59529774	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59618653	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs60525181	1.00[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs61059482	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61172485	0.83[EUR][1000 genomes]
rs6977264	0.83[EUR][1000 genomes]
rs7777414	0.83[EUR][1000 genomes]
rs7787953	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7794053	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1844385	chr7:16168502-16211553	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948950	chr7:16168925-16395434	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv971167	chr7:16174475-16196736	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16183600-16184800	Enhancers	A549	lung
2	chr7:16183800-16184800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:16183800-16184800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:16183800-16184800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr7:16183800-16184800	ZNF genes & repeats	Pancreas	Pancrea
6	chr7:16183800-16185000	ZNF genes & repeats	Placenta	Placenta
7	chr7:16184000-16185800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:16184200-16185000	ZNF genes & repeats	Fetal Lung	lung
9	chr7:16184600-16185000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:16184600-16185000	ZNF genes & repeats	Gastric	stomach

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