Variant report
| Variant | rs61059482 |
|---|---|
| Chromosome Location | chr7:16147246-16147247 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:16129270..16132173-chr7:16145466..16147559,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000273477 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10274855 | 1.00[EUR][1000 genomes] |
| rs1034960 | 1.00[EUR][1000 genomes] |
| rs13438329 | 1.00[EUR][1000 genomes] |
| rs17169255 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17169286 | 1.00[AFR][1000 genomes] |
| rs17169339 | 1.00[EUR][1000 genomes] |
| rs17169340 | 1.00[EUR][1000 genomes] |
| rs17169341 | 1.00[EUR][1000 genomes] |
| rs17169343 | 1.00[EUR][1000 genomes] |
| rs17169347 | 1.00[EUR][1000 genomes] |
| rs17169349 | 1.00[EUR][1000 genomes] |
| rs17169351 | 1.00[EUR][1000 genomes] |
| rs17169353 | 1.00[EUR][1000 genomes] |
| rs17169354 | 1.00[EUR][1000 genomes] |
| rs28446402 | 1.00[EUR][1000 genomes] |
| rs28470194 | 1.00[EUR][1000 genomes] |
| rs28640135 | 1.00[EUR][1000 genomes] |
| rs57213749 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59096069 | 1.00[EUR][1000 genomes] |
| rs59529774 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59618653 | 0.92[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60082144 | 1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60525181 | 1.00[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61172485 | 1.00[EUR][1000 genomes] |
| rs6977264 | 1.00[EUR][1000 genomes] |
| rs7777414 | 1.00[EUR][1000 genomes] |
| rs7787953 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7794053 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv949309 | chr7:15986709-16236162 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv949555 | chr7:16078412-16279290 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv1035015 | chr7:16144928-16273061 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:16146000-16148600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:16146800-16147800 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
