Variant report

Variant	rs7787953
Chromosome Location	chr7:16160986-16160987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16160260..16161964-chr7:16601044..16602872,2	K562	blood:
2	chr7:16150627..16153575-chr7:16159253..16161215,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10274855	1.00[EUR][1000 genomes]
rs1034960	1.00[EUR][1000 genomes]
rs13438329	1.00[EUR][1000 genomes]
rs17169255	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169286	1.00[AFR][1000 genomes]
rs17169336	0.89[JPT][hapmap]
rs17169337	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs17169339	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];1.00[EUR][1000 genomes]
rs17169340	1.00[EUR][1000 genomes]
rs17169341	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs17169343	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs17169347	0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs17169349	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes]
rs17169351	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17169353	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17169354	1.00[EUR][1000 genomes]
rs28446402	1.00[EUR][1000 genomes]
rs28470194	1.00[EUR][1000 genomes]
rs28640135	1.00[EUR][1000 genomes]
rs57213749	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59096069	1.00[EUR][1000 genomes]
rs59529774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59618653	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs60082144	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60525181	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61059482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61172485	1.00[EUR][1000 genomes]
rs6977264	1.00[EUR][1000 genomes]
rs7777414	1.00[EUR][1000 genomes]
rs7794053	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035015	chr7:16144928-16273061	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1847175	chr7:16155335-16272661	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16156800-16164200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:16158200-16170400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:16160000-16163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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