Variant report

Variant	rs6979583
Chromosome Location	chr7:16110544-16110545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10487907	0.92[ASN][1000 genomes]
rs17169227	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169337	1.00[CEU][hapmap]
rs17169339	1.00[CEU][hapmap]
rs17169341	1.00[CEU][hapmap]
rs17169343	1.00[CEU][hapmap]
rs17169349	1.00[CEU][hapmap]
rs17169351	1.00[CEU][hapmap]
rs17169353	1.00[CEU][hapmap]
rs28483341	0.92[ASN][1000 genomes]
rs73680572	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949555	chr7:16078412-16279290	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16102000-16113200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:16103600-16114800	Weak transcription	Fetal Heart	heart
3	chr7:16107000-16111000	Weak transcription	Stomach Mucosa	stomach
4	chr7:16107800-16110600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:16107800-16110800	Weak transcription	HUVEC	blood vessel
6	chr7:16108200-16110800	Weak transcription	Adipose Nuclei	Adipose
7	chr7:16109600-16110600	Enhancers	Liver	Liver
8	chr7:16110000-16110600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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