Variant report

Variant	rs17170339
Chromosome Location	chr7:146853711-146853712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12703880	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12703882	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12703884	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs13223406	1.00[CEU][hapmap]
rs13232077	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs13237218	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13244716	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs13309902	0.84[EUR][1000 genomes]
rs1603455	0.82[CEU][hapmap]
rs17170328	0.89[EUR][1000 genomes]
rs17170331	0.85[EUR][1000 genomes]
rs17170336	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs17170368	0.82[CEU][hapmap]
rs17409131	0.82[CEU][hapmap]
rs35265883	0.80[AFR][1000 genomes]
rs35332063	0.88[EUR][1000 genomes]
rs71530770	0.89[EUR][1000 genomes]
rs71530773	0.80[AFR][1000 genomes]
rs924146	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933033	chr7:146720301-147081560	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1033898	chr7:146721499-147081768	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv889395	chr7:146848251-146969389	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links