Variant report

Variant	rs17171531
Chromosome Location	chr7:39123325-39123326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10499612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951591	1.00[EUR][1000 genomes]
rs10951592	1.00[EUR][1000 genomes]
rs11972970	1.00[CEU][hapmap]
rs11976952	1.00[CEU][hapmap]
rs12535553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177798	1.00[CEU][hapmap]
rs6948756	0.87[EUR][1000 genomes]
rs7779586	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7802955	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39115600-39125200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:39120400-39123600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:39122000-39123400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:39122400-39124000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:39122600-39125000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:39122800-39125000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:39123000-39124400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:39123200-39124400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr7:39123200-39124800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:39123200-39125000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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