Variant report

Variant	rs2177798
Chromosome Location	chr7:39072159-39072160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10085472	1.00[JPT][hapmap]
rs10499612	1.00[CEU][hapmap]
rs11976952	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11980369	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535553	1.00[CEU][hapmap]
rs17171485	0.81[TSI][hapmap]
rs17171531	1.00[CEU][hapmap]
rs17171532	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2893569	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3999863	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376417	0.81[TSI][hapmap]
rs4507665	0.81[TSI][hapmap]
rs6948756	0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs702821	1.00[JPT][hapmap]
rs7779586	1.00[CEU][hapmap]
rs7802955	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs859530	1.00[JPT][hapmap]
rs859548	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39067400-39073600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:39067400-39074200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:39072000-39072200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:39072000-39072400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr7:39072000-39073600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:39072000-39075000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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