Variant report

Variant	rs6948756
Chromosome Location	chr7:39093439-39093440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10085472	0.93[ASN][1000 genomes]
rs10499612	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10951591	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951592	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11976952	0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs11980369	0.83[EUR][1000 genomes]
rs12535553	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12538569	1.00[ASN][1000 genomes]
rs1525797	0.96[ASN][1000 genomes]
rs17171531	0.87[EUR][1000 genomes]
rs17171532	0.87[EUR][1000 genomes]
rs2177798	0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs2893569	0.83[EUR][1000 genomes]
rs6969605	0.93[ASN][1000 genomes]
rs6969723	0.93[ASN][1000 genomes]
rs7779586	0.90[YRI][hapmap]
rs7802955	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39082400-39094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39091800-39097800	Weak transcription	Aorta	Aorta
3	chr7:39092400-39094000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links