Variant report

Variant	rs17171577
Chromosome Location	chr7:39469652-39469653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12111665	1.00[AMR][1000 genomes]
rs12112344	1.00[AMR][1000 genomes]
rs17171576	1.00[AMR][1000 genomes]
rs17171578	1.00[AMR][1000 genomes]
rs17171579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17171581	0.85[AFR][1000 genomes]
rs2237387	1.00[AMR][1000 genomes]
rs6948411	1.00[AMR][1000 genomes]
rs73386460	1.00[AMR][1000 genomes]
rs73386463	1.00[AMR][1000 genomes]
rs73386466	1.00[AMR][1000 genomes]
rs73386468	1.00[AMR][1000 genomes]
rs73386479	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386490	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388309	1.00[AMR][1000 genomes]
rs73388311	1.00[AMR][1000 genomes]
rs73388323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73388355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs758247	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39462600-39470800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:39468400-39471000	Weak transcription	Aorta	Aorta
3	chr7:39468400-39473800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:39469200-39470200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:39469400-39470800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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