Variant report

Variant	rs73388309
Chromosome Location	chr7:39471856-39471857
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12111665	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12112344	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533673	0.87[ASN][1000 genomes]
rs17171576	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171577	1.00[AMR][1000 genomes]
rs17171578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171579	1.00[AMR][1000 genomes]
rs17713095	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17713107	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17713143	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17769981	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17769987	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2052017	0.87[ASN][1000 genomes]
rs2052018	0.87[ASN][1000 genomes]
rs2052019	0.87[ASN][1000 genomes]
rs2073539	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2073545	0.91[ASN][1000 genomes]
rs2237384	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237392	0.91[ASN][1000 genomes]
rs2237394	0.91[ASN][1000 genomes]
rs2237397	0.91[ASN][1000 genomes]
rs2237398	0.91[ASN][1000 genomes]
rs2237399	0.91[ASN][1000 genomes]
rs2282915	0.87[ASN][1000 genomes]
rs2299134	0.91[ASN][1000 genomes]
rs3800850	0.90[ASN][1000 genomes]
rs3819416	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948411	1.00[AMR][1000 genomes]
rs73386460	1.00[AMR][1000 genomes]
rs73386463	1.00[AMR][1000 genomes]
rs73386466	1.00[AMR][1000 genomes]
rs73386468	1.00[AMR][1000 genomes]
rs73386479	1.00[AMR][1000 genomes]
rs73386490	1.00[AMR][1000 genomes]
rs73388304	1.00[AMR][1000 genomes]
rs73388311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73388323	1.00[AMR][1000 genomes]
rs73388355	1.00[AMR][1000 genomes]
rs758247	1.00[AMR][1000 genomes]
rs980392	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39468400-39473800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:39470800-39472000	Enhancers	Fetal Muscle Leg	muscle
3	chr7:39471400-39472200	Enhancers	Fetal Muscle Trunk	muscle
4	chr7:39471400-39474000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:39471600-39472600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:39471800-39473000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:39471800-39474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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