Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10231896	1.00[AMR][1000 genomes]
rs10241938	1.00[AMR][1000 genomes]
rs10246249	1.00[AMR][1000 genomes]
rs10266285	1.00[AMR][1000 genomes]
rs12111665	0.91[ASN][1000 genomes]
rs12112344	0.91[ASN][1000 genomes]
rs17171576	0.91[ASN][1000 genomes]
rs17171578	0.91[ASN][1000 genomes]
rs17713095	0.81[ASN][1000 genomes]
rs17713107	0.81[ASN][1000 genomes]
rs17713143	0.81[ASN][1000 genomes]
rs17769981	0.81[ASN][1000 genomes]
rs17769987	0.81[ASN][1000 genomes]
rs2073539	0.91[ASN][1000 genomes]
rs2073545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2237384	0.91[ASN][1000 genomes]
rs2237386	0.91[ASN][1000 genomes]
rs2237387	0.91[ASN][1000 genomes]
rs2237388	0.91[ASN][1000 genomes]
rs2237392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237405	0.87[EUR][1000 genomes]
rs2237409	0.87[EUR][1000 genomes]
rs2299134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513923	1.00[AMR][1000 genomes]
rs28755939	1.00[AMR][1000 genomes]
rs3800850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819416	0.89[ASN][1000 genomes]
rs73388309	0.91[ASN][1000 genomes]
rs73388311	0.91[ASN][1000 genomes]
rs7810746	1.00[AMR][1000 genomes]
rs980392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39462600-39470800	Weak transcription	Fetal Muscle Leg	muscle

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