Variant report

Variant	rs3800850
Chromosome Location	chr7:39453082-39453083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10231896	1.00[AMR][1000 genomes]
rs10237217	1.00[AMR][1000 genomes]
rs10241938	1.00[AMR][1000 genomes]
rs10246249	1.00[AMR][1000 genomes]
rs10249232	1.00[AMR][1000 genomes]
rs10252450	1.00[AMR][1000 genomes]
rs10266285	1.00[AMR][1000 genomes]
rs10275109	1.00[AMR][1000 genomes]
rs11971430	1.00[AMR][1000 genomes]
rs12111665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12112344	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs12533673	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17171576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs17171578	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs17713095	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17713107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17713143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2052017	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2052018	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2052019	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2073539	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2073545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2237384	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237386	0.90[ASN][1000 genomes]
rs2237387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2237392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237394	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237399	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2237405	0.87[EUR][1000 genomes]
rs2237409	0.87[EUR][1000 genomes]
rs2282915	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2299134	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28513923	1.00[AMR][1000 genomes]
rs28755939	1.00[AMR][1000 genomes]
rs3819416	0.87[ASN][1000 genomes]
rs73388309	0.90[ASN][1000 genomes]
rs73388311	0.90[ASN][1000 genomes]
rs7810746	1.00[AMR][1000 genomes]
rs980392	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv981456	chr7:39431071-39454006	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39446400-39453400	Weak transcription	Pancreas	Pancrea
2	chr7:39447200-39453400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39447600-39453200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:39447800-39453400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:39447800-39453400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:39448200-39453200	Weak transcription	Fetal Intestine Large	intestine
7	chr7:39448600-39453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:39452000-39453200	Weak transcription	Adipose Nuclei	Adipose
9	chr7:39452000-39453400	Weak transcription	Brain Germinal Matrix	brain
10	chr7:39452800-39453200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:39453000-39453400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:39453000-39454600	Active TSS	iPS-20b Cell Line	embryonic stem cell

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