Variant report

Variant	rs2237409
Chromosome Location	chr7:39396672-39396673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2237392	0.87[EUR][1000 genomes]
rs2237394	0.87[EUR][1000 genomes]
rs2237397	0.87[EUR][1000 genomes]
rs2237398	0.87[EUR][1000 genomes]
rs2237399	0.87[EUR][1000 genomes]
rs2237405	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299134	0.87[EUR][1000 genomes]
rs3800850	0.87[EUR][1000 genomes]
rs980392	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39394600-39397000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39394800-39396800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:39394800-39396800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:39394800-39399600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:39394800-39400000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:39394800-39400000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:39394800-39400000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:39395400-39397200	Enhancers	NHDF-Ad	bronchial
9	chr7:39395600-39400000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:39396000-39403400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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