Variant report

Variant	rs980392
Chromosome Location	chr7:39467220-39467221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12111665	0.91[ASN][1000 genomes]
rs12112344	0.91[ASN][1000 genomes]
rs17171576	0.91[ASN][1000 genomes]
rs17171578	0.91[ASN][1000 genomes]
rs17713095	0.81[ASN][1000 genomes]
rs17713107	0.81[ASN][1000 genomes]
rs17713143	0.81[ASN][1000 genomes]
rs17769981	0.81[ASN][1000 genomes]
rs17769987	0.81[ASN][1000 genomes]
rs2073539	0.91[ASN][1000 genomes]
rs2073545	1.00[ASN][1000 genomes]
rs2237384	0.91[ASN][1000 genomes]
rs2237386	0.91[ASN][1000 genomes]
rs2237387	0.91[ASN][1000 genomes]
rs2237388	0.91[ASN][1000 genomes]
rs2237392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237405	0.87[EUR][1000 genomes]
rs2237409	0.87[EUR][1000 genomes]
rs2299134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800850	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3819416	0.89[ASN][1000 genomes]
rs73388309	0.91[ASN][1000 genomes]
rs73388311	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39462600-39470800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:39466600-39467600	Weak transcription	HSMM	muscle
3	chr7:39467200-39468400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links