Variant report

Variant	rs17173582
Chromosome Location	chr7:150429758-150429759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150428030..150430773-chr7:150431433..150433417,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10239400	0.82[JPT][hapmap]
rs10271868	0.82[JPT][hapmap]
rs10361	0.82[JPT][hapmap]
rs1046355	0.82[JPT][hapmap]
rs11760839	0.82[JPT][hapmap]
rs11983675	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12703097	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13240273	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13247782	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1860871	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2041574	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2109999	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2159842	0.87[EUR][1000 genomes]
rs2286898	0.82[JPT][hapmap]
rs2286899	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs2286900	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2373850	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28418764	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs28505524	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs28641865	0.82[ASN][1000 genomes]
rs34443555	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34531981	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35370936	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3735077	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3735078	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62490385	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6598	0.82[JPT][hapmap]
rs67727004	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6945478	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6971135	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6978252	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6980405	0.82[JPT][hapmap]
rs759011	0.82[JPT][hapmap]
rs7798682	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9657886	0.82[JPT][hapmap]
rs9657890	0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs9657894	0.82[JPT][hapmap]
rs9657898	0.81[JPT][hapmap]
rs9657900	0.82[JPT][hapmap]
rs9690530	0.84[EUR][1000 genomes]
rs9969243	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17173582	IAN4L1	cis	multi-tissue	Pritchard

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150422000-150433600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr7:150425000-150432600	Weak transcription	Thymus	Thymus
3	chr7:150426400-150430400	Enhancers	Dnd41	blood
4	chr7:150426600-150430000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:150426600-150432000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr7:150426800-150432800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150428200-150430600	Enhancers	Primary T cells from cord blood	blood
8	chr7:150428800-150430200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr7:150429000-150430000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr7:150429000-150430600	Enhancers	Fetal Thymus	thymus
11	chr7:150429000-150431200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr7:150429000-150431800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:150429000-150432600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:150429000-150434000	Enhancers	GM12878-XiMat	blood
15	chr7:150429200-150430400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:150429200-150430600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr7:150429200-150430600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr7:150429400-150433200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr7:150429600-150430000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr7:150429600-150432600	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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