Variant report

Variant	rs67727004
Chromosome Location	chr7:150391076-150391077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150384449..150386247-chr7:150390461..150392753,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10232092	0.81[AMR][1000 genomes]
rs11983675	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12703095	0.81[AMR][1000 genomes]
rs12703097	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13240273	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13240287	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247782	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17173582	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1860871	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2041574	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2075078	0.89[ASN][1000 genomes]
rs2109999	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2159842	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286900	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373850	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34443555	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34531981	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35370936	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35662160	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3735077	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3735078	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4725927	0.83[ASN][1000 genomes]
rs55821597	0.81[AMR][1000 genomes]
rs62490382	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62490385	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945478	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6953961	0.81[AMR][1000 genomes]
rs6971135	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6978252	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7798682	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9690530	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150383600-150391400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:150383800-150392200	Weak transcription	Right Atrium	heart
3	chr7:150383800-150392200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr7:150385000-150391600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:150385800-150391200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
6	chr7:150385800-150392200	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:150386200-150391200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:150386600-150391200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr7:150387000-150393200	ZNF genes & repeats	Primary T cells from cord blood	blood
10	chr7:150387200-150391200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr7:150387200-150393600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr7:150387600-150391400	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr7:150387800-150391200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
14	chr7:150388000-150391200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
15	chr7:150388000-150391200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr7:150388200-150391200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr7:150388200-150391600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:150388400-150392200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:150389400-150391200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:150389600-150392200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:150390000-150391200	Weak transcription	Left Ventricle	heart
22	chr7:150390000-150392200	Weak transcription	Colonic Mucosa	Colon
23	chr7:150390000-150392600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:150390200-150391400	Weak transcription	Adipose Nuclei	Adipose
25	chr7:150390200-150392200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr7:150390200-150392200	Weak transcription	Liver	Liver
27	chr7:150390400-150391600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr7:150390600-150393200	Enhancers	Dnd41	blood

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