Variant report

Variant	rs35370936
Chromosome Location	chr7:150419400-150419401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150418208..150420407-chr7:150499249..150501046,2	K562	blood:
2	chr7:150411749..150416479-chr7:150417256..150421069,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GIMAP5-1	chr7:150419045-150420240	NONHSAT124149
2	lnc-GIMAP5-1	chr7:150419341-150419458	NONHSAT124150

Variant related genes	Relation type
ENSG00000213203	Chromatin interaction
ENSG00000002933	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10232092	0.81[AMR][1000 genomes]
rs11983675	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12703095	0.81[AMR][1000 genomes]
rs12703097	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13240273	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13240287	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13247782	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17173582	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1860871	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2041574	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2075078	0.86[ASN][1000 genomes]
rs2109999	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2159842	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2286900	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373850	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34443555	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34531981	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35662160	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3735077	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735078	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55821597	0.81[AMR][1000 genomes]
rs62490382	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62490385	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67727004	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6945478	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6953961	0.81[AMR][1000 genomes]
rs6971135	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6978252	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7798682	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690530	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	esv2758617	chr7:150251949-150463804	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2759573	chr7:150251949-150463804	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150414000-150419400	Weak transcription	Fetal Lung	lung
2	chr7:150414400-150419600	Weak transcription	Gastric	stomach
3	chr7:150414600-150421800	Weak transcription	Fetal Intestine Small	intestine
4	chr7:150415200-150419400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr7:150415200-150420400	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
6	chr7:150415200-150424800	Weak transcription	Pancreas	Pancrea
7	chr7:150415600-150419600	Weak transcription	Right Ventricle	heart
8	chr7:150415800-150419400	Weak transcription	Liver	Liver
9	chr7:150415800-150420800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:150416000-150419400	Strong transcription	Fetal Thymus	thymus
11	chr7:150416000-150420200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:150416200-150420600	Genic enhancers	Primary monocytes fromperipheralblood	blood
13	chr7:150416200-150420800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
14	chr7:150416400-150419400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:150416400-150419400	Weak transcription	Right Atrium	heart
16	chr7:150416400-150419600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:150416600-150419400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:150416800-150422000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:150417200-150419400	Weak transcription	Fetal Brain Male	brain
20	chr7:150417400-150420000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
21	chr7:150417400-150423400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr7:150417600-150419400	Weak transcription	Left Ventricle	heart
23	chr7:150417800-150419800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr7:150417800-150419800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr7:150417800-150419800	Weak transcription	Placenta	Placenta
26	chr7:150417800-150420000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr7:150417800-150422600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr7:150417800-150423400	Weak transcription	Thymus	Thymus
29	chr7:150418000-150419600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:150418000-150419600	Weak transcription	Esophagus	oesophagus
31	chr7:150418000-150424800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr7:150418200-150419400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr7:150418200-150419400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:150418200-150420800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr7:150418400-150419600	Genic enhancers	Monocytes-CD14+_RO01746	blood
36	chr7:150418400-150420800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:150418800-150421400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr7:150419000-150419400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:150419000-150419400	Genic enhancers	Dnd41	blood
40	chr7:150419000-150419600	Enhancers	Brain Cingulate Gyrus	brain
41	chr7:150419000-150419600	Genic enhancers	HUVEC	blood vessel
42	chr7:150419000-150419800	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
43	chr7:150419000-150419800	Enhancers	Fetal Muscle Leg	muscle
44	chr7:150419000-150420000	Genic enhancers	Lung	lung
45	chr7:150419200-150419400	Active TSS	Adipose Nuclei	Adipose
46	chr7:150419200-150419400	Enhancers	Brain Anterior Caudate	brain
47	chr7:150419200-150419400	Enhancers	Brain Hippocampus Middle	brain
48	chr7:150419200-150419400	Enhancers	Brain Substantia Nigra	brain
49	chr7:150419200-150419600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr7:150419200-150419800	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood

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