Variant report

Variant	rs17177303
Chromosome Location	chr12:4927391-4927392
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4922495..4924301-chr12:4925509..4927745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130035	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11063356	0.86[ASN][1000 genomes]
rs12306037	0.86[ASN][1000 genomes]
rs12321952	0.86[ASN][1000 genomes]
rs17783805	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17783817	0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17783823	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17783925	0.94[ASN][1000 genomes]
rs35250434	0.85[ASN][1000 genomes]
rs41276712	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56021447	0.86[ASN][1000 genomes]
rs56748976	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56893870	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57928290	0.94[ASN][1000 genomes]
rs57945693	0.94[ASN][1000 genomes]
rs60191275	0.94[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4922200-4928400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:4922600-4927400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr12:4923600-4927600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:4923800-4927600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr12:4924000-4928400	Enhancers	Fetal Heart	heart
6	chr12:4925200-4932000	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:4925400-4927800	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr12:4925600-4934600	Enhancers	Primary B cells from cord blood	blood
9	chr12:4925800-4928000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr12:4926000-4927400	Enhancers	Fetal Muscle Trunk	muscle
11	chr12:4926000-4927400	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr12:4926000-4927400	Bivalent Enhancer	Fetal Stomach	stomach
13	chr12:4926000-4927800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr12:4926000-4929800	Enhancers	Fetal Thymus	thymus
15	chr12:4926000-4930000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:4926200-4927400	Enhancers	Left Ventricle	heart
17	chr12:4926200-4927800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr12:4926400-4927800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:4926400-4928200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr12:4926400-4928400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr12:4926400-4939000	Weak transcription	Spleen	Spleen
22	chr12:4926600-4927400	Enhancers	Primary hematopoietic stem cells	blood
23	chr12:4926600-4927600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr12:4926600-4927800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr12:4926600-4927800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr12:4926600-4927800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr12:4926600-4928200	Enhancers	Thymus	Thymus
28	chr12:4926600-4928400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr12:4926600-4929000	Enhancers	Brain Substantia Nigra	brain
30	chr12:4926800-4927400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr12:4926800-4927600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
32	chr12:4926800-4927800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
33	chr12:4927000-4927400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr12:4927000-4927400	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr12:4927000-4927400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr12:4927000-4927400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr12:4927000-4927400	Flanking Active TSS	Fetal Brain Female	brain
38	chr12:4927000-4927400	Enhancers	Psoas Muscle	Psoas
39	chr12:4927000-4927400	Enhancers	Right Ventricle	heart
40	chr12:4927000-4927400	Enhancers	Stomach Smooth Muscle	stomach
41	chr12:4927000-4927600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr12:4927000-4927600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr12:4927000-4927600	Active TSS	Brain Hippocampus Middle	brain
44	chr12:4927000-4927800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:4927200-4927400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr12:4927200-4927400	Weak transcription	Brain Angular Gyrus	brain
47	chr12:4927200-4927400	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr12:4927200-4927400	Enhancers	Fetal Brain Male	brain
49	chr12:4927200-4927400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr12:4927200-4927600	Active TSS	Brain Cingulate Gyrus	brain

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