Variant report

Variant	rs17783823
Chromosome Location	chr12:4915846-4915847
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11063356	0.83[ASN][1000 genomes]
rs12306037	0.83[ASN][1000 genomes]
rs12321952	0.83[ASN][1000 genomes]
rs17177303	0.90[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17783805	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17783817	0.90[CEU][hapmap];0.93[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17783925	0.89[ASN][1000 genomes]
rs35250434	0.82[ASN][1000 genomes]
rs41276712	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56021447	0.82[ASN][1000 genomes]
rs56748976	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56893870	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57928290	0.89[ASN][1000 genomes]
rs57945693	0.89[ASN][1000 genomes]
rs60191275	0.89[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4884400-4918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:4901000-4917800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:4901200-4917800	Weak transcription	Fetal Brain Female	brain
4	chr12:4903800-4917600	Weak transcription	Fetal Brain Male	brain
5	chr12:4915400-4916000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr12:4915400-4918000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:4915400-4918200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr12:4915600-4916400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:4915600-4916800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:4915600-4917600	Enhancers	GM12878-XiMat	blood
11	chr12:4915600-4917800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr12:4915600-4918000	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr12:4915600-4920000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr12:4915800-4916000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:4915800-4916000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr12:4915800-4916800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr12:4915800-4917800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr12:4915800-4918000	Enhancers	Dnd41	blood
19	chr12:4915800-4918600	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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