Variant report

Variant	rs56748976
Chromosome Location	chr12:4923364-4923365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11063356	0.86[ASN][1000 genomes]
rs12306037	0.86[ASN][1000 genomes]
rs12321952	0.86[ASN][1000 genomes]
rs17177303	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17783805	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17783817	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17783823	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17783925	0.94[ASN][1000 genomes]
rs35250434	0.85[ASN][1000 genomes]
rs41276712	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56021447	0.86[ASN][1000 genomes]
rs56893870	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57928290	0.94[ASN][1000 genomes]
rs57945693	0.94[ASN][1000 genomes]
rs60191275	0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4917600-4926200	Enhancers	Fetal Brain Male	brain
2	chr12:4919200-4926000	Weak transcription	Aorta	Aorta
3	chr12:4919800-4926000	Weak transcription	Right Atrium	heart
4	chr12:4920000-4927000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:4921200-4923400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr12:4921200-4923400	Active TSS	Fetal Brain Female	brain
7	chr12:4921400-4923400	Weak transcription	Brain Anterior Caudate	brain
8	chr12:4921800-4923800	Enhancers	Brain Germinal Matrix	brain
9	chr12:4921800-4925200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr12:4921800-4925800	Weak transcription	Fetal Stomach	stomach
11	chr12:4922000-4923400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr12:4922200-4926000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:4922200-4928400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr12:4922600-4923400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr12:4922600-4923600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:4922600-4925600	Weak transcription	Primary B cells from cord blood	blood
17	chr12:4922600-4927400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr12:4922800-4923800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr12:4922800-4925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr12:4923000-4923400	Enhancers	HMEC	breast
21	chr12:4923000-4923600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:4923200-4926400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:4923200-4926400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr12:4923200-4926600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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