Variant report

Variant	rs17189168
Chromosome Location	chr2:53324413-53324414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:153962995..153964668-chr2:53323824..53325477,2	K562	blood:

Variant related genes	Relation type
ENSG00000177954	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10445891	1.00[ASN][1000 genomes]
rs10445935	1.00[ASN][1000 genomes]
rs10496013	1.00[ASN][1000 genomes]
rs11899579	0.96[EUR][1000 genomes]
rs11902991	1.00[ASN][1000 genomes]
rs12476215	0.96[EUR][1000 genomes]
rs12478233	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1424964	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189147	1.00[ASN][1000 genomes]
rs17189154	1.00[ASN][1000 genomes]
rs17189182	1.00[EUR][1000 genomes]
rs17189189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267721	0.96[EUR][1000 genomes]
rs17267741	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17267748	1.00[ASN][1000 genomes]
rs3861569	0.95[EUR][1000 genomes]
rs55635428	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094713	1.00[ASN][1000 genomes]
rs56208689	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56276721	1.00[ASN][1000 genomes]
rs56306560	1.00[ASN][1000 genomes]
rs56327707	1.00[ASN][1000 genomes]
rs57712347	1.00[ASN][1000 genomes]
rs59769996	1.00[ASN][1000 genomes]
rs61128889	1.00[ASN][1000 genomes]
rs66492582	1.00[ASN][1000 genomes]
rs66516773	1.00[ASN][1000 genomes]
rs66795271	1.00[ASN][1000 genomes]
rs6756589	1.00[ASN][1000 genomes]
rs72797218	1.00[ASN][1000 genomes]
rs72797229	1.00[ASN][1000 genomes]
rs73933945	0.96[EUR][1000 genomes]
rs7569736	1.00[ASN][1000 genomes]
rs7572883	1.00[ASN][1000 genomes]
rs7575959	1.00[ASN][1000 genomes]
rs7595912	1.00[ASN][1000 genomes]
rs7602050	1.00[ASN][1000 genomes]
rs7608261	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9677395	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53323400-53326200	Enhancers	Fetal Brain Male	brain
2	chr2:53323800-53325200	Weak transcription	Fetal Kidney	kidney

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