Variant report

Variant	rs66795271
Chromosome Location	chr2:53333678-53333679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10445891	1.00[ASN][1000 genomes]
rs10445935	1.00[ASN][1000 genomes]
rs10496013	1.00[ASN][1000 genomes]
rs11902991	1.00[ASN][1000 genomes]
rs1424964	1.00[ASN][1000 genomes]
rs1424966	1.00[ASN][1000 genomes]
rs1424967	0.99[EUR][1000 genomes]
rs17044078	0.85[AFR][1000 genomes]
rs17044122	0.89[EUR][1000 genomes]
rs17044123	0.89[EUR][1000 genomes]
rs17189147	1.00[ASN][1000 genomes]
rs17189154	1.00[ASN][1000 genomes]
rs17189168	1.00[ASN][1000 genomes]
rs17189189	1.00[ASN][1000 genomes]
rs17267741	1.00[ASN][1000 genomes]
rs17267748	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55635428	1.00[ASN][1000 genomes]
rs55694730	0.89[EUR][1000 genomes]
rs56094713	1.00[ASN][1000 genomes]
rs56208689	1.00[ASN][1000 genomes]
rs56276721	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56306560	1.00[ASN][1000 genomes]
rs56327707	1.00[ASN][1000 genomes]
rs56329869	0.87[EUR][1000 genomes]
rs57712347	1.00[ASN][1000 genomes]
rs59769996	1.00[ASN][1000 genomes]
rs60327066	0.87[AFR][1000 genomes]
rs61128889	1.00[ASN][1000 genomes]
rs66492582	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66516773	1.00[ASN][1000 genomes]
rs6752368	0.94[EUR][1000 genomes]
rs6756589	1.00[ASN][1000 genomes]
rs67901982	0.91[AFR][1000 genomes]
rs72797218	1.00[ASN][1000 genomes]
rs72797229	1.00[ASN][1000 genomes]
rs7569736	1.00[ASN][1000 genomes]
rs7572883	1.00[ASN][1000 genomes]
rs7575959	1.00[ASN][1000 genomes]
rs7595912	1.00[ASN][1000 genomes]
rs7602050	1.00[ASN][1000 genomes]
rs7608261	1.00[ASN][1000 genomes]
rs9677395	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011118	chr2:53328397-53375220	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53331600-53337400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:53331800-53338000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:53332200-53336800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:53332200-53337600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:53332400-53337400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:53332400-53337400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:53332400-53337600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:53332400-53338000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:53332400-53340200	Weak transcription	H1 Cell Line	embryonic stem cell

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