Variant report

Variant	rs6756589
Chromosome Location	chr2:53285869-53285870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10445891	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10445934	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10445935	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496013	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902991	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1424964	1.00[ASN][1000 genomes]
rs1424966	1.00[ASN][1000 genomes]
rs1446444	0.81[EUR][1000 genomes]
rs17189105	0.82[EUR][1000 genomes]
rs17189147	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189154	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189168	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17189189	1.00[ASN][1000 genomes]
rs17267700	0.97[EUR][1000 genomes]
rs17267741	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17267748	1.00[ASN][1000 genomes]
rs17574042	0.82[EUR][1000 genomes]
rs2357012	0.81[EUR][1000 genomes]
rs55635428	1.00[ASN][1000 genomes]
rs55668463	0.82[EUR][1000 genomes]
rs56094713	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095011	0.89[EUR][1000 genomes]
rs56208689	1.00[ASN][1000 genomes]
rs56225075	0.81[EUR][1000 genomes]
rs56276721	1.00[ASN][1000 genomes]
rs56306560	1.00[ASN][1000 genomes]
rs56327707	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57712347	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57907911	0.82[EUR][1000 genomes]
rs59769996	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61128889	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66492582	1.00[ASN][1000 genomes]
rs66516773	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66727116	0.82[EUR][1000 genomes]
rs66795271	1.00[ASN][1000 genomes]
rs6717549	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67280986	0.82[EUR][1000 genomes]
rs67601045	0.82[EUR][1000 genomes]
rs67942596	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72795337	0.82[EUR][1000 genomes]
rs72795345	0.80[EUR][1000 genomes]
rs72797218	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797229	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569736	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572883	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575959	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7595912	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7602050	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608261	1.00[ASN][1000 genomes]
rs9677395	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv581979	chr2:53216917-53288066	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1000235	chr2:53218841-53290638	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	nsv1014197	chr2:53219203-53290638	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
6	nsv581982	chr2:53256694-53295106	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
7	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53285400-53286200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:53285600-53286000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:53285600-53286000	Enhancers	HMEC	breast
4	chr2:53285600-53286200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:53285800-53286200	Enhancers	HUES6 Cell Line	embryonic stem cell

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