Variant report
| Variant | rs56095011 |
|---|---|
| Chromosome Location | chr2:53300399-53300400 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10445891 | 0.92[EUR][1000 genomes] |
| rs10445934 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10445935 | 0.90[EUR][1000 genomes] |
| rs10496013 | 0.92[EUR][1000 genomes] |
| rs11902991 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs17189147 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17189154 | 0.95[EUR][1000 genomes] |
| rs17267700 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56094713 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56327707 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs57712347 | 0.89[EUR][1000 genomes] |
| rs59769996 | 0.93[EUR][1000 genomes] |
| rs61128889 | 0.92[EUR][1000 genomes] |
| rs66516773 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6717549 | 0.83[EUR][1000 genomes] |
| rs6756589 | 0.89[EUR][1000 genomes] |
| rs67942596 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72797218 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72797229 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7569736 | 0.88[EUR][1000 genomes] |
| rs7572883 | 0.83[EUR][1000 genomes] |
| rs7575959 | 0.88[EUR][1000 genomes] |
| rs7595912 | 0.88[EUR][1000 genomes] |
| rs7602050 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520722 | chr2:53039770-53421015 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012463 | chr2:53187151-53377118 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv874141 | chr2:53263644-53352630 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:53300000-53300400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
