Variant report

Variant	rs6717549
Chromosome Location	chr2:53295296-53295297
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10445891	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10445934	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10445935	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10496013	0.87[EUR][1000 genomes]
rs11902991	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17189147	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17189154	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17189168	1.00[JPT][hapmap]
rs17267700	0.87[EUR][1000 genomes]
rs17267741	1.00[JPT][hapmap]
rs56094713	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56095011	0.83[EUR][1000 genomes]
rs56327707	0.86[EUR][1000 genomes]
rs57712347	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59769996	0.89[EUR][1000 genomes]
rs61128889	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66516773	0.81[EUR][1000 genomes]
rs6756589	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67942596	0.87[EUR][1000 genomes]
rs72797218	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72797229	0.83[EUR][1000 genomes]
rs7569736	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7572883	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7575959	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7595912	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7602050	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv874141	chr2:53263644-53352630	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53294400-53298400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links