Variant report

Variant	rs17190618
Chromosome Location	chr2:58882765-58882766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10490092	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10490093	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13026438	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13421824	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17049642	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17190597	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17269154	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17269182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17549476	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17549656	0.90[EUR][1000 genomes]
rs17549677	0.92[EUR][1000 genomes]
rs17549712	0.93[EUR][1000 genomes]
rs17549754	0.91[EUR][1000 genomes]
rs17549803	0.91[EUR][1000 genomes]
rs17614872	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17614895	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17615036	0.88[EUR][1000 genomes]
rs17615120	0.92[EUR][1000 genomes]
rs17615185	0.91[EUR][1000 genomes]
rs17615279	0.91[EUR][1000 genomes]
rs17615309	0.91[EUR][1000 genomes]
rs17615381	0.91[EUR][1000 genomes]
rs1922781	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1950160	0.93[EUR][1000 genomes]
rs2204913	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55645922	0.93[EUR][1000 genomes]
rs55745617	0.93[EUR][1000 genomes]
rs56174720	0.92[EUR][1000 genomes]
rs56266136	0.93[EUR][1000 genomes]
rs56365214	0.92[EUR][1000 genomes]
rs60018257	0.91[EUR][1000 genomes]
rs7419776	0.84[ASN][1000 genomes]
rs984881	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs984882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs984883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58879800-58884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:58881200-58884000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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