Variant report

Variant	rs55745617
Chromosome Location	chr2:58929148-58929149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58911712..58913853-chr2:58927545..58930002,2	K562	blood:
2	chr2:58923225..58924937-chr2:58928981..58930771,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10490092	0.98[EUR][1000 genomes]
rs10490093	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026438	0.99[EUR][1000 genomes]
rs13421824	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17049642	0.98[EUR][1000 genomes]
rs17190597	0.95[EUR][1000 genomes]
rs17190618	0.93[EUR][1000 genomes]
rs17269154	0.98[EUR][1000 genomes]
rs17269182	0.99[EUR][1000 genomes]
rs17549476	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549656	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549677	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549754	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549803	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550194	0.90[AMR][1000 genomes]
rs17550487	0.87[AMR][1000 genomes]
rs17614872	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17614895	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17615036	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615120	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615185	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615279	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615309	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615381	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615638	0.90[AMR][1000 genomes]
rs1922781	0.98[EUR][1000 genomes]
rs1922783	0.90[AMR][1000 genomes]
rs1950160	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204913	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35026255	0.82[AMR][1000 genomes]
rs55645922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56266136	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56365214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60018257	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60888271	0.90[AMR][1000 genomes]
rs984881	0.97[EUR][1000 genomes]
rs984882	0.98[EUR][1000 genomes]
rs984883	0.97[EUR][1000 genomes]
rs993531	0.90[AMR][1000 genomes]
rs993532	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58916800-58929200	Weak transcription	K562	blood
2	chr2:58926600-58929600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:58927000-58929200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr2:58928800-58929800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:58928800-58930200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:58928800-58931400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr2:58929000-58929800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:58929000-58930200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr2:58929000-58930200	Enhancers	HMEC	breast
10	chr2:58929000-58930200	Enhancers	HUVEC	blood vessel
11	chr2:58929000-58930600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links