Variant report

Variant	rs2204913
Chromosome Location	chr2:58916222-58916223
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10490092	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10490093	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13026438	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13421824	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17049642	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17190597	0.93[EUR][1000 genomes]
rs17190618	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17269154	0.96[EUR][1000 genomes]
rs17269182	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17549476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549656	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549677	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549712	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549754	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17549803	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17550194	0.90[AMR][1000 genomes]
rs17550487	0.87[AMR][1000 genomes]
rs17614872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17614895	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17615036	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615120	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615185	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615279	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615309	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17615638	0.90[AMR][1000 genomes]
rs1922781	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1922783	0.90[AMR][1000 genomes]
rs1950160	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35026255	0.82[AMR][1000 genomes]
rs55645922	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55745617	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56174720	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56266136	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56365214	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60018257	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60888271	0.90[AMR][1000 genomes]
rs984881	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs984882	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs984883	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs993531	0.90[AMR][1000 genomes]
rs993532	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58915000-58917400	Weak transcription	Right Atrium	heart
2	chr2:58915600-58916800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:58916200-58916400	Flanking Active TSS	K562	blood
4	chr2:58916200-58916600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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