Variant report
| Variant | rs35026255 |
|---|---|
| Chromosome Location | chr2:59006122-59006123 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:59003612..59006402-chr2:59008651..59011062,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10490093 | 0.82[AMR][1000 genomes] |
| rs13421824 | 0.82[AMR][1000 genomes] |
| rs17549476 | 0.82[AMR][1000 genomes] |
| rs17549712 | 0.82[AMR][1000 genomes] |
| rs17549754 | 0.82[AMR][1000 genomes] |
| rs17549803 | 0.82[AMR][1000 genomes] |
| rs17550194 | 0.91[AMR][1000 genomes] |
| rs17550487 | 0.94[AMR][1000 genomes] |
| rs17550550 | 0.83[AMR][1000 genomes] |
| rs17550821 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs17551326 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17551473 | 1.00[ASN][1000 genomes] |
| rs17614872 | 0.82[AMR][1000 genomes] |
| rs17614895 | 0.82[AMR][1000 genomes] |
| rs17615185 | 0.82[AMR][1000 genomes] |
| rs17615279 | 0.82[AMR][1000 genomes] |
| rs17615309 | 0.82[AMR][1000 genomes] |
| rs17615381 | 0.82[AMR][1000 genomes] |
| rs17615638 | 0.91[AMR][1000 genomes] |
| rs1922783 | 0.91[AMR][1000 genomes] |
| rs1950160 | 0.82[AMR][1000 genomes] |
| rs2204913 | 0.82[AMR][1000 genomes] |
| rs55645922 | 0.82[AMR][1000 genomes] |
| rs55745617 | 0.82[AMR][1000 genomes] |
| rs56174720 | 0.82[AMR][1000 genomes] |
| rs56266136 | 0.82[AMR][1000 genomes] |
| rs56365214 | 0.82[AMR][1000 genomes] |
| rs60018257 | 0.82[AMR][1000 genomes] |
| rs60888271 | 0.91[AMR][1000 genomes] |
| rs993531 | 0.91[AMR][1000 genomes] |
| rs993532 | 0.91[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv431180 | chr2:58857542-59178687 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:59004600-59006200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr2:59005800-59010400 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
