Variant report

Variant	rs17203439
Chromosome Location	chr3:121795506-121795507
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:121795470-121795786	MCF10A-Er-Src	breast:	n/a	n/a
2	RUNX3	chr3:121795188-121797854	GM12878	blood:	n/a	n/a
3	SP1	chr3:121795343-121795983	HepG2	liver:	n/a	n/a
4	MTA3	chr3:121794950-121799623	GM12878	blood:	n/a	n/a
5	POLR2A	chr3:121795437-121797732	GM12891	blood:	n/a	n/a
6	HNF4G	chr3:121795346-121795949	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
7	FOXA1	chr3:121795336-121795816	HepG2	liver:	n/a	n/a
8	EBF1	chr3:121795153-121797811	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:121795059-121798114	GM12878	blood:	n/a	n/a
10	HNF4A	chr3:121795296-121795975	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795759-121795774 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
11	POLR2A	chr3:121795126-121797684	GM15510	blood:	n/a	n/a
12	FOSL2	chr3:121795501-121795907	HepG2	liver:	n/a	n/a
13	NFYB	chr3:121795021-121795511	GM12878	blood:	n/a	n/a
14	RELA	chr3:121795261-121797791	GM10847	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121795327-121795336 chr3:121796549-121796558 chr3:121796549-121796558 chr3:121795327-121795336
15	STAT5A	chr3:121795496-121797873	GM12878	blood:	n/a	chr3:121797144-121797152 chr3:121796184-121796193 chr3:121796183-121796192
16	POLR2A	chr3:121795126-121797918	GM12878	blood:	n/a	n/a
17	RXRA	chr3:121795309-121795692	HepG2	liver:	n/a	chr3:121795463-121795476 chr3:121795462-121795478 chr3:121795463-121795476 chr3:121795462-121795476 chr3:121795399-121795412 chr3:121795533-121795542 chr3:121795463-121795476 chr3:121795460-121795480
18	FOXA2	chr3:121795373-121795631	HepG2	liver:	n/a	n/a
19	ZNF143	chr3:121795495-121796897	GM12878	blood:	n/a	n/a
20	EP300	chr3:121795276-121795610	HepG2	liver:	n/a	n/a
21	FOS	chr3:121795285-121795792	MCF10A-Er-Src	breast:	n/a	chr3:121795411-121795422 chr3:121795409-121795420
22	EP300	chr3:121795389-121797818	GM12878	blood:	n/a	n/a
23	BHLHE40	chr3:121795116-121797860	GM12878	blood:	n/a	n/a
24	RELA	chr3:121795371-121797703	GM18951	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121796549-121796558 chr3:121796549-121796558
25	FOS	chr3:121795253-121795815	HUVEC	blood vessel:	n/a	chr3:121795411-121795422 chr3:121795409-121795420
26	SPI1	chr3:121795225-121795547	GM12878	blood:	n/a	chr3:121795395-121795402 chr3:121795392-121795405
27	CHD1	chr3:121795241-121798185	GM12878	blood:	n/a	n/a
28	POLR2A	chr3:121795293-121797450	GM12878	blood:	n/a	n/a
29	STAT3	chr3:121795457-121795796	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr3:121792444-121801560	GM12878	blood:	n/a	n/a
31	FOS	chr3:121795478-121795798	MCF10A-Er-Src	breast:	n/a	n/a
32	FOXA1	chr3:121795325-121795929	HepG2	liver:	n/a	n/a
33	RELA	chr3:121795170-121798038	GM12878	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121795327-121795336 chr3:121796549-121796558 chr3:121796549-121796558 chr3:121795327-121795336
34	FOXA1	chr3:121795345-121795955	HepG2	liver:	n/a	n/a
35	CHD2	chr3:121795285-121797779	GM12878	blood:	n/a	n/a
36	HNF4A	chr3:121795342-121795910	HepG2	liver:	n/a	chr3:121795533-121795545 chr3:121795529-121795541 chr3:121795759-121795774 chr3:121795528-121795542 chr3:121795529-121795542 chr3:121795524-121795546 chr3:121795528-121795541 chr3:121795463-121795477 chr3:121795526-121795544 chr3:121795529-121795541 chr3:121795529-121795541
37	STAT3	chr3:121795486-121795774	MCF10A-Er-Src	breast:	n/a	n/a
38	PML	chr3:121795498-121797724	GM12878	blood:	n/a	n/a
39	POLR2A	chr3:121793374-121798119	GM18505	blood:	n/a	n/a
40	MXI1	chr3:121795125-121797626	GM12878	blood:	n/a	n/a
41	USF2	chr3:121795089-121795791	GM12878	blood:	n/a	n/a
42	POLR2A	chr3:121795233-121797590	GM18951	blood:	n/a	n/a
43	POLR2A	chr3:121795199-121797877	GM12878	blood:	n/a	n/a
44	CEBPB	chr3:121795483-121795925	HepG2	liver:	n/a	n/a
45	FOXA1	chr3:121795304-121796082	HepG2	liver:	n/a	n/a
46	POLR2A	chr3:121795308-121797498	GM19193	blood:	n/a	n/a
47	NFIC	chr3:121795111-121795712	GM12878	blood:	n/a	n/a
48	WRNIP1	chr3:121795302-121797469	GM12878	blood:	n/a	n/a
49	RELA	chr3:121795288-121797749	GM12891	blood:	n/a	chr3:121797302-121797311 chr3:121797302-121797311 chr3:121795327-121795336 chr3:121796549-121796558 chr3:121796549-121796558 chr3:121795327-121795336

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121771737..121774786-chr3:121794365..121797921,3	MCF-7	breast:

Variant related genes	Relation type
CD86	TF binding region
ENSG00000114013	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10511408	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17203418	1.00[CEU][hapmap];0.93[AMR][1000 genomes]
rs17281953	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36226551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36226875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3942629	1.00[LWK][hapmap]
rs7617517	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121786600-121815800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:121792000-121798400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:121792400-121795600	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:121792800-121795600	Enhancers	Primary B cells from cord blood	blood
5	chr3:121792800-121797600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:121792800-121798400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:121793000-121795800	Weak transcription	Esophagus	oesophagus
8	chr3:121793200-121795600	Weak transcription	Placenta	Placenta
9	chr3:121793800-121795800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:121794200-121795600	Weak transcription	Spleen	Spleen
11	chr3:121794400-121795600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:121794400-121797400	Enhancers	Adipose Nuclei	Adipose
13	chr3:121794800-121796400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:121795000-121795600	Enhancers	NHEK	skin
15	chr3:121795200-121796000	Enhancers	HUVEC	blood vessel
16	chr3:121795200-121796200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:121795200-121796200	Enhancers	Liver	Liver
18	chr3:121795200-121796400	Flanking Active TSS	GM12878-XiMat	blood
19	chr3:121795200-121796600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:121795200-121797000	Enhancers	HepG2	liver
21	chr3:121795400-121795600	Enhancers	Fetal Muscle Leg	muscle
22	chr3:121795400-121796000	Enhancers	Fetal Intestine Small	intestine
23	chr3:121795400-121796000	Enhancers	HMEC	breast
24	chr3:121795400-121796200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:121795400-121796200	Enhancers	Fetal Intestine Large	intestine
26	chr3:121795400-121796400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:121795400-121796400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:121795400-121796600	Enhancers	Primary hematopoietic stem cells	blood
29	chr3:121795400-121797000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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