Variant report

Variant	rs36226875
Chromosome Location	chr3:121795029-121795030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr3:121794950-121799623	GM12878	blood:	n/a	n/a
2	NFYB	chr3:121795021-121795511	GM12878	blood:	n/a	n/a
3	POLR2A	chr3:121792444-121801560	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:121793374-121798119	GM18505	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:121771737..121774786-chr3:121794365..121797921,3	MCF-7	breast:

Variant related genes	Relation type
CD86	TF binding region
ENSG00000114013	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17203418	0.93[AMR][1000 genomes]
rs17203439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17281953	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36226551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617517	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121786600-121815800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:121792000-121798400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:121792400-121795600	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:121792800-121795600	Enhancers	Primary B cells from cord blood	blood
5	chr3:121792800-121797600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr3:121792800-121798400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:121793000-121795800	Weak transcription	Esophagus	oesophagus
8	chr3:121793200-121795400	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:121793200-121795600	Weak transcription	Placenta	Placenta
10	chr3:121793800-121795800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr3:121794000-121795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:121794000-121795200	Weak transcription	HepG2	liver
13	chr3:121794000-121795400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:121794200-121795400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:121794200-121795600	Weak transcription	Spleen	Spleen
16	chr3:121794400-121795600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:121794400-121797400	Enhancers	Adipose Nuclei	Adipose
18	chr3:121794600-121795200	Active TSS	GM12878-XiMat	blood
19	chr3:121794800-121796400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:121795000-121795600	Enhancers	NHEK	skin

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