Variant report

Variant	rs7617517
Chromosome Location	chr3:121742739-121742740
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10511408	0.86[AMR][1000 genomes]
rs17203418	0.93[AMR][1000 genomes]
rs17203439	0.86[AMR][1000 genomes]
rs17281953	0.93[AMR][1000 genomes]
rs36226551	0.86[AMR][1000 genomes]
rs36226875	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121740800-121744200	Weak transcription	Small Intestine	intestine
2	chr3:121741000-121743800	Weak transcription	Gastric	stomach
3	chr3:121741400-121742800	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:121741400-121742800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:121741400-121743000	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:121741400-121749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:121741600-121743400	Enhancers	GM12878-XiMat	blood
8	chr3:121741600-121743600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:121741800-121742800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:121742000-121742800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:121742000-121743800	Weak transcription	Fetal Heart	heart
12	chr3:121742400-121742800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:121742400-121743000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:121742400-121745000	Enhancers	Primary B cells from cord blood	blood
15	chr3:121742400-121748800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:121742600-121742800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:121742600-121742800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:121742600-121742800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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