Variant report

Variant	rs17216782
Chromosome Location	chr3:56834978-56834979
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:56715514..56718317-chr3:56833414..56836251,4	MCF-7	breast:
2	chr3:56716275..56717973-chr3:56833928..56836671,2	K562	blood:
3	chr3:56833930..56835654-chr3:56847983..56850097,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17057321	0.95[ASN][1000 genomes]
rs2047626	0.88[CHB][hapmap];0.87[JPT][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59475336	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59870621	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73833732	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433156	0.88[CHB][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7622820	0.86[JPT][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56832000-56835000	Flanking Active TSS	Dnd41	blood
2	chr3:56832000-56835800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:56832200-56835400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr3:56832200-56835400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr3:56832400-56835000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:56832400-56836200	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr3:56832400-56836200	Active TSS	Primary T cells fromperipheralblood	blood
8	chr3:56832400-56836200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:56832400-56836600	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr3:56832800-56836400	Active TSS	Thymus	Thymus
11	chr3:56832800-56836600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:56833000-56835600	Flanking Active TSS	HUVEC	blood vessel
13	chr3:56833000-56836400	Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:56833000-56836400	Active TSS	HMEC	breast
15	chr3:56833200-56835000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr3:56833200-56835400	Flanking Active TSS	NHEK	skin
17	chr3:56833200-56836000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
18	chr3:56833400-56835000	Active TSS	Duodenum Mucosa	Duodenum
19	chr3:56833400-56835400	Weak transcription	Aorta	Aorta
20	chr3:56833400-56836200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:56833400-56836600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:56833600-56835000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:56833600-56835000	Active TSS	Osteobl	bone
24	chr3:56833600-56835200	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr3:56833600-56835200	Weak transcription	A549	lung
26	chr3:56833800-56835000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:56833800-56835400	Flanking Active TSS	Brain Cingulate Gyrus	brain
28	chr3:56833800-56835400	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr3:56834000-56835000	Flanking Active TSS	HSMMtube	muscle
30	chr3:56834000-56835200	Weak transcription	Hela-S3	cervix
31	chr3:56834000-56835400	Flanking Active TSS	Fetal Brain Female	brain
32	chr3:56834000-56835800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr3:56834200-56835200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:56834200-56835200	Flanking Active TSS	GM12878-XiMat	blood
35	chr3:56834200-56835400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr3:56834200-56835400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:56834200-56835400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:56834200-56835400	Flanking Active TSS	Fetal Thymus	thymus
39	chr3:56834200-56835600	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr3:56834200-56835600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr3:56834200-56835600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr3:56834200-56835800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr3:56834200-56835800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr3:56834400-56835000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
45	chr3:56834400-56835000	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr3:56834400-56835000	Active TSS	Fetal Stomach	stomach
47	chr3:56834400-56835000	Flanking Active TSS	Psoas Muscle	Psoas
48	chr3:56834400-56835200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
49	chr3:56834400-56835200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:56834400-56835200	Active TSS	Colonic Mucosa	Colon

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