Variant report

Variant	rs7433156
Chromosome Location	chr3:56844691-56844692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56843995..56846689-chr3:56863654..56866290,2	MCF-7	breast:
2	chr3:56726200..56728005-chr3:56842796..56845095,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17057321	0.93[ASN][1000 genomes]
rs17216782	0.88[CHB][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2047626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59475336	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59870621	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73833732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622820	0.84[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56836400-56845800	Weak transcription	Lung	lung
2	chr3:56836600-56845200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr3:56836800-56845000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:56836800-56845400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:56836800-56846000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:56836800-56846800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:56837000-56844800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:56839200-56845000	Weak transcription	Fetal Thymus	thymus
9	chr3:56839200-56845000	Weak transcription	HepG2	liver
10	chr3:56839800-56845600	Weak transcription	Fetal Kidney	kidney
11	chr3:56840800-56844800	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:56840800-56845600	Weak transcription	Brain Angular Gyrus	brain
13	chr3:56840800-56845800	Weak transcription	Esophagus	oesophagus
14	chr3:56840800-56845800	Weak transcription	Fetal Heart	heart
15	chr3:56840800-56847800	Weak transcription	Right Ventricle	heart
16	chr3:56840800-56861000	Weak transcription	Left Ventricle	heart
17	chr3:56841000-56844800	Weak transcription	Fetal Brain Male	brain
18	chr3:56841000-56845000	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:56841000-56847000	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:56841000-56847200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:56841600-56845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:56841600-56845800	Weak transcription	Fetal Brain Female	brain
23	chr3:56844000-56846000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:56844000-56853000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:56844200-56847000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr3:56844200-56848000	Enhancers	Placenta	Placenta
27	chr3:56844200-56853400	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:56844200-56853400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr3:56844400-56845000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr3:56844400-56853000	Enhancers	Primary T cells fromperipheralblood	blood
31	chr3:56844600-56846400	Enhancers	Dnd41	blood
32	chr3:56844600-56847000	Enhancers	Primary T cells from cord blood	blood
33	chr3:56844600-56847200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:56844600-56848800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr3:56844600-56853000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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