Variant report

Variant	rs17057321
Chromosome Location	chr3:56833024-56833025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56715789..56718047-chr3:56832707..56834723,2	K562	blood:
2	chr3:56823666..56826610-chr3:56831227..56833916,2	K562	blood:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12636108	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs13434307	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17057326	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17216782	0.95[ASN][1000 genomes]
rs2047626	0.93[ASN][1000 genomes]
rs59475336	0.95[ASN][1000 genomes]
rs59870621	0.95[ASN][1000 genomes]
rs73833732	0.93[ASN][1000 genomes]
rs7433156	0.93[ASN][1000 genomes]
rs7622820	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3392720	chr3:56829812-56833210	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
4	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
5	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:56826400-56833200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:56827400-56834400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:56829000-56833200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:56829000-56833200	Enhancers	Stomach Mucosa	stomach
11	chr3:56829400-56833200	Weak transcription	Hela-S3	cervix
12	chr3:56829600-56833200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:56829600-56833200	Enhancers	Fetal Brain Male	brain
14	chr3:56830000-56833200	Weak transcription	Esophagus	oesophagus
15	chr3:56830200-56833200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:56830600-56833200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:56830600-56833200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:56830600-56834200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:56830800-56833200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:56830800-56833200	Weak transcription	Adipose Nuclei	Adipose
21	chr3:56830800-56833200	Weak transcription	Lung	lung
22	chr3:56830800-56833200	Weak transcription	Right Ventricle	heart
23	chr3:56831000-56833200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:56831000-56833200	Weak transcription	Brain Germinal Matrix	brain
25	chr3:56831000-56833200	Weak transcription	Fetal Lung	lung
26	chr3:56831000-56833200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr3:56831000-56833200	Weak transcription	Small Intestine	intestine
28	chr3:56831200-56833200	Weak transcription	Placenta	Placenta
29	chr3:56831200-56833200	Weak transcription	Left Ventricle	heart
30	chr3:56831400-56833200	Weak transcription	Ovary	ovary
31	chr3:56831400-56833200	Weak transcription	Spleen	Spleen
32	chr3:56831600-56833200	Weak transcription	Pancreas	Pancrea
33	chr3:56831600-56834400	Active TSS	Fetal Kidney	kidney
34	chr3:56831800-56833200	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr3:56831800-56833200	Enhancers	NHEK	skin
36	chr3:56832000-56833200	Enhancers	Primary B cells from peripheral blood	blood
37	chr3:56832000-56833200	Enhancers	Primary hematopoietic stem cells	blood
38	chr3:56832000-56833200	Enhancers	Brain Substantia Nigra	brain
39	chr3:56832000-56833800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:56832000-56835000	Flanking Active TSS	Dnd41	blood
41	chr3:56832000-56835800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:56832200-56833200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr3:56832200-56833200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:56832200-56833200	Weak transcription	Gastric	stomach
45	chr3:56832200-56833200	Weak transcription	Psoas Muscle	Psoas
46	chr3:56832200-56833200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:56832200-56833200	Active TSS	GM12878-XiMat	blood
48	chr3:56832200-56833800	Active TSS	Brain Hippocampus Middle	brain
49	chr3:56832200-56834200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:56832200-56834200	Active TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links