Variant report

Variant	rs17229048
Chromosome Location	chr15:33291862-33291863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33289408..33292508-chr15:33359912..33362781,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248905	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10519771	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11630735	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11631942	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11637416	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11637853	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12899665	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12902782	1.00[AFR][1000 genomes]
rs12902947	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12907653	1.00[AFR][1000 genomes]
rs12909898	1.00[AFR][1000 genomes]
rs12911519	1.00[AFR][1000 genomes]
rs12914708	1.00[AFR][1000 genomes]
rs16962859	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16962944	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28373061	1.00[ASN][1000 genomes]
rs28404179	1.00[ASN][1000 genomes]
rs28436666	1.00[ASN][1000 genomes]
rs28548712	1.00[ASN][1000 genomes]
rs34053978	1.00[AFR][1000 genomes]
rs34292665	1.00[AFR][1000 genomes]
rs34331348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718785	1.00[AFR][1000 genomes]
rs35158642	1.00[AFR][1000 genomes]
rs35978285	0.94[ASN][1000 genomes]
rs6494831	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6494832	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs71462834	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71462838	1.00[AFR][1000 genomes]
rs71462844	1.00[AFR][1000 genomes]
rs71462846	1.00[AFR][1000 genomes]
rs71462848	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv568917	chr15:33167171-33304172	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1047542	chr15:33282673-33307206	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv1036917	chr15:33284701-33312362	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv2761862	chr15:33284713-33312374	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv521903	chr15:33289949-33301508	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33273200-33294000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:33286000-33294000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr15:33286800-33300000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:33286800-33301200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:33287200-33294000	Weak transcription	Osteobl	bone
6	chr15:33287200-33300400	Weak transcription	NHDF-Ad	bronchial
7	chr15:33288800-33309200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:33289200-33298800	Weak transcription	Fetal Thymus	thymus
9	chr15:33289400-33299400	Weak transcription	NHLF	lung
10	chr15:33289800-33292200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:33290200-33292000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:33291000-33299200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:33291200-33301200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:33291400-33292000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr15:33291400-33292400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:33291400-33292400	Enhancers	Adipose Nuclei	Adipose
17	chr15:33291800-33292400	ZNF genes & repeats	HSMM	muscle

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