Variant report

Variant	rs17230638
Chromosome Location	chr21:39895471-39895472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17230645	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2836429	1.00[JPT][hapmap]
rs2836468	0.80[EUR][1000 genomes]
rs2836470	0.81[GIH][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs3787911	0.80[EUR][1000 genomes]
rs7283796	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73906313	1.00[ASN][1000 genomes]
rs73906316	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17230638	RPS4Y1	trans	lymphoblastoid	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39892000-39896000	Enhancers	HepG2	liver
2	chr21:39892600-39896000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39893600-39896400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr21:39895400-39895800	Enhancers	Aorta	Aorta
5	chr21:39895400-39896200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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