Variant report

Variant	rs17230645
Chromosome Location	chr21:39896374-39896375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17230638	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2836429	1.00[JPT][hapmap]
rs2836468	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836470	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3787911	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59887250	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7283796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73906313	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73906316	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39893600-39896400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr21:39895800-39897200	Weak transcription	Aorta	Aorta
3	chr21:39896000-39896400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr21:39896000-39896600	Flanking Active TSS	HepG2	liver
5	chr21:39896000-39910400	Weak transcription	Small Intestine	intestine
6	chr21:39896200-39896600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links