Variant report

Variant	rs2836468
Chromosome Location	chr21:39897264-39897265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17230638	0.80[EUR][1000 genomes]
rs17230645	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2836457	0.83[ASN][1000 genomes]
rs2836460	0.83[ASN][1000 genomes]
rs2836461	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2836462	0.83[ASN][1000 genomes]
rs2836465	0.83[ASN][1000 genomes]
rs2836467	0.83[ASN][1000 genomes]
rs2836470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836524	1.00[CHB][hapmap]
rs3787911	1.00[CEU][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59887250	0.82[EUR][1000 genomes]
rs7283796	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73906313	0.80[EUR][1000 genomes]
rs73906316	0.92[EUR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39896000-39910400	Weak transcription	Small Intestine	intestine
2	chr21:39896400-39899400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39896600-39900200	Enhancers	HepG2	liver
4	chr21:39897000-39897600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr21:39897200-39897800	Enhancers	Aorta	Aorta
6	chr21:39897200-39897800	Bivalent Enhancer	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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